Basic Information
Locus ID:
BH02.2406
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Carbon catabolite repressor protein 4 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 31095506 | 31100767 | - | BH02.2406 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.44 | 65,731.68 Da | 60.86 | 85.15 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 17 | 68 | 3.25821E-18 | - |
| Pfam | PF12906 | RING-variant domain | 17 | 67 | 1.7E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 15 | 72 | 7.77E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 80 | 2.4E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 16 | 68 | 1.2E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 9 | 74 | 20.329136 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 588 | 608 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 324 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 1.48E-92 |
| RefSeq | XP_025815414.1 | uncharacterized protein LOC112892474 [Panicum hallii] | 2.18E-124 |
| TrEMBL | A0A3L6SVE0 | RING-CH-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM07G15500 PE=4 SV=1 | 1.02E-128 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology