Basic Information
Locus ID:
BH02.2353
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 30562064 | 30562768 | - | BH02.2353 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 24,575.57 Da | 40.56 | 81.24 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 160 | 222 | 6.32915E-21 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 79 | 139 | 3.8E-7 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 159 | 221 | 1.5E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 74 | 221 | 1.01E-36 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 73 | 142 | 6.9E-16 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 154 | 228 | 3.7E-23 | - |
| SMART | SM00054 | efh_1 | 196 | 224 | 1.7E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 117 | 145 | 1.9 | IPR002048 |
| SMART | SM00054 | efh_1 | 160 | 188 | 6.2E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 80 | 108 | 0.097 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 76 | 111 | 12.755995 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 156 | 191 | 15.238686 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 113 | 148 | 9.771187 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 192 | 227 | 13.564962 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 89 | 101 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 169 | 181 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 126 | 138 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 205 | 217 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 73 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 7.52E-35 |
| RefSeq | XP_022682297.1 | probable calcium-binding protein CML14 [Setaria italica] | 4.07E-86 |
| Q5ZD81 | Probable calcium-binding protein CML12 OS=Oryza sativa subsp. japonica OX=39947 GN=CML12 PE=2 SV=1 | 2.47E-41 | |
| TrEMBL | K3XLL5 | Calcium-binding protein CML15 OS=Setaria italica OX=4555 GN=SETIT_5G217800v2 PE=4 SV=1 | 1.17E-85 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology