Basic Information
Locus ID:
BH02.2319
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 30021363 | 30023466 | - | BH02.2319 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 30,018.58 Da | 42.96 | 94.57 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 32 | 68 | 7.77602E-16 | - |
| Pfam | PF12906 | RING-variant domain | 32 | 65 | 5.4E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 25 | 69 | 3.0E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 74 | 1.9E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 31 | 70 | 4.6E-8 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 24 | 90 | 16.931753 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 2.09E-81 |
| RefSeq | XP_025815430.1 | uncharacterized protein LOC112892497 [Panicum hallii] | 4.19E-124 |
| TrEMBL | A0A2T8ILD9 | RING-CH-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_5G257500 PE=4 SV=1 | 9.48E-123 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology