halophFGD

Basic Information

Locus ID: BH02.2210

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: LYAR-type C2HC zinc finger

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH02	28807474	28813047	+	BH02.2210

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.34	57,734.34 Da	52.99	94.85	0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF81383	F-box domain	5	43	9.29E-6	IPR036047
SUPERFAMILY	SSF52047	RNI-like	167	338	8.37E-7	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	136	444	6.2E-8	IPR032675

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K15263 (cell growth-regulating nucleolar protein)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_052141466.1	uncharacterized protein LOC127761238 [Oryza glaberrima]	1.14E-87
TrEMBL	A0A1E5W1K4	FBD domain-containing protein (Fragment) OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0007694 PE=4 SV=1	1.16E-109

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	3	BH02.2210, BH03.345, CH02.2359
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_1AG0022050
Poaceae	Oryza coarctata	2	Oco01G013310, Oco02G013450
Poaceae	Oryza sativa	2	LOC_Os01g40120.1, LOC_Os01g40160.1
Poaceae	Triticum aestivum	1	TraesCS6B02G453400.1