Basic Information
Locus ID:
BH02.2063
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 26618906 | 26623911 | - | BH02.2063 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.96 | 87,837.66 Da | 70.80 | 59.80 | -0.97 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 23 | 54 | 2.71351E-4 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 376 | 505 | 3.89948E-63 | - |
| Pfam | PF00397 | WW domain | 22 | 52 | 3.3E-6 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 387 | 496 | 5.3E-34 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 181 | 350 | 2.2E-49 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 229 | 514 | 1.45E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 55 | 1.64E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 131 | 366 | 3.6E-88 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 16 | 62 | 8.1E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 367 | 537 | 4.5E-59 | IPR027417 |
| SMART | SM00487 | ultradead3 | 176 | 379 | 1.4E-62 | IPR014001 |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.5E-5 | IPR001202 |
| SMART | SM00490 | helicmild6 | 416 | 496 | 5.2E-35 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 188 | 362 | 30.320681 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 157 | 185 | 11.504468 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.152 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 391 | 535 | 25.835522 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 308 | 316 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 793 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 612 | 645 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 714 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 611 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 116 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 2.38E-253 |
| RefSeq | XP_025819517.1 | DEAD-box ATP-dependent RNA helicase 40-like isoform X1 [Panicum hallii] | 0 |
| Q5JKF2 | DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2S3HV28 | DEAD-box ATP-dependent RNA helicase 14 OS=Panicum hallii OX=206008 GN=PAHAL_5G282900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology