Basic Information
Locus ID:
BH02.2023
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PPR repeat family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 26105242 | 26111466 | + | BH02.2023 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 132,321.92 Da | 41.12 | 91.00 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 753 | 797 | 3.05293E-7 | IPR018392 |
| Pfam | PF01535 | PPR repeat | 182 | 211 | 4.6E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 283 | 307 | 0.0042 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 356 | 379 | 0.52 | IPR002885 |
| Pfam | PF00069 | Protein kinase domain | 901 | 1173 | 2.5E-49 | IPR000719 |
| Pfam | PF01476 | LysM domain | 754 | 798 | 4.0E-8 | IPR018392 |
| Pfam | PF13041 | PPR repeat family | 382 | 430 | 4.6E-10 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 154 | 177 | 0.045 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 83 | 126 | 0.0093 | IPR002885 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 882 | 1176 | 2.29E-73 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 752 | 798 | 1.96E-7 | IPR036779 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 28 | 134 | 1.6E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 246 | 341 | 1.4E-13 | IPR011990 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 744 | 809 | 1.3E-12 | IPR036779 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 356 | 594 | 4.2E-35 | IPR011990 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 880 | 971 | 6.5E-23 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 135 | 233 | 5.0E-16 | IPR011990 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 972 | 1188 | 2.0E-56 | - |
| SMART | SM00257 | LysM_2 | 753 | 798 | 1.0E-7 | IPR018392 |
| SMART | SM00220 | serkin_6 | 900 | 1176 | 2.9E-37 | IPR000719 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 384 | 417 | 1.5E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 182 | 215 | 5.9E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 420 | 447 | 1.3E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 283 | 316 | 0.002 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 417 | 447 | 10.610596 | IPR002885 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 16 | 5.0 | - |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 281 | 315 | 10.281757 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 180 | 214 | 10.775016 | IPR002885 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 752 | 797 | 11.683058 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 900 | 1176 | 39.735634 | IPR000719 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 382 | 416 | 10.654441 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 79 | 113 | 9.45966 | IPR002885 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 906 | 928 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1019 | 1031 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64310.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 1.94E-123 |
| RefSeq | XP_034596799.1 | lysM domain receptor-like kinase 3 isoform X1 [Setaria viridis] | 0 |
| Q9C7V5 | Putative pentatricopeptide repeat-containing protein At1g64310 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E65 PE=3 SV=1 | 1.87E-122 | |
| TrEMBL | A0A1E5VL77 | Putative pentatricopeptide repeat-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0013122 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34607 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30221690 |
| Apiaceae | Apium graveolens | 3 | Ag11G04094, Ag1G01455, Ag7G01757 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G005710 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709353 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2935.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G09111, Ftri3G12296 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.608, evm.TU.LG06.1275 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022342 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1970, BH02.2023, CH02.2193 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0070200 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0300890.1 |
| Poaceae | Oryza coarctata | 2 | Oco01G012190, Oco02G012360 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g36550.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G167000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602964 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr03G008720, Chr03G008730, Chr05G015810 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G590700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG053320, gene_TRIDC3BG059990 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G370900.1, TraesCS3B02G403100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb162660_P002, Zm00001eb342090_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-53089 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8023 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_11_RagTag.1056, evm.TU.Scaffold_7_RagTag.82 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-14735, nbisL1-mrna-19662, nbisL1-mrna-26956 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-11195, nbisL1-mrna-1299, nbisL1-mrna-4003 |
| Rhizophoraceae | Ceriops zippeliana | 5 | nbisL1-mrna-12616, nbisL1-mrna-15623, nbisL1-mrna-15624 ... |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000001l.222, add.evm.TU.utg000010l.46 ... |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19951 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-22602, nbisL1-mrna-8692, nbisL1-mrna-8693 |
| Salicaceae | Populus euphratica | 3 | populus_peu07722, populus_peu12884, populus_peu28690 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132616971, gene-LOC132616978 |
| Solanaceae | Solanum chilense | 1 | SOLCI005510800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107022454 |