Basic Information
Locus ID:
BH02.1996
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Domain of unknown function (DUF3403)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 25754847 | 25758867 | - | BH02.1996 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 69,655.52 Da | 39.45 | 89.63 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 316 | 582 | 3.32166E-96 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 313 | 580 | 7.5E-48 | IPR001245 |
| Pfam | PF01657 | Salt stress response/antifungal | 39 | 134 | 4.0E-14 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 183 | 260 | 7.4E-8 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 291 | 583 | 1.46E-81 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 34 | 140 | 5.1E-16 | IPR038408 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 271 | 385 | 9.4E-38 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 161 | 264 | 2.8E-17 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 386 | 587 | 6.9E-60 | - |
| SMART | SM00220 | serkin_6 | 310 | 584 | 3.1E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 310 | 597 | 38.548378 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 159 | 266 | 15.502172 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 37 | 140 | 16.31686 | IPR002902 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 432 | 444 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23180.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 10. Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) | 2.8E-135 |
| RefSeq | XP_012701442.1 | cysteine-rich receptor-like protein kinase 15 [Setaria italica] | 0 |
| Q8GYA4 | Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana OX=3702 GN=CRK10 PE=1 SV=3 | 2.7E-134 | |
| TrEMBL | K3XQ77 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=101781384 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH02.1996, CH02.2153 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0019950, gene-QOZ80_1BG0069640 |
| Poaceae | Oryza coarctata | 1 | Oco01G012050 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr24G009140 |