Basic Information
Locus ID:
BH02.194
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the WD repeat SEC13 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 1971755 | 1980779 | + | BH02.194 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 77,181.62 Da | 52.62 | 74.27 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 147 | 195 | 0.1 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 8 | 37 | 0.027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 94 | 132 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 46 | 85 | 1.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 210 | 244 | 0.025 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 290 | 7.59E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 301 | 1.3E-97 | IPR015943 |
| SMART | SM00320 | WD40_4 | 44 | 85 | 1.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 251 | 290 | 0.44 | IPR001680 |
| SMART | SM00320 | WD40_4 | 139 | 195 | 0.57 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 39 | 0.35 | IPR001680 |
| SMART | SM00320 | WD40_4 | 92 | 133 | 2.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 245 | 3.0E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 7 | 37 | 8.603614 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 51 | 85 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 209 | 244 | 9.177421 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 51 | 85 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 209 | 244 | 10.942887 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01340.1 | Transducin/WD40 repeat-like superfamily protein. | 2.2E-116 |
| RefSeq | XP_039811173.1 | protein transport protein SEC13 homolog B-like [Panicum virgatum] | 4.62E-190 |
| Q9SRI1 | Protein transport protein SEC13 homolog A OS=Arabidopsis thaliana OX=3702 GN=SEC13A PE=1 SV=1 | 2.12E-115 | |
| TrEMBL | K3XKD9 | WD_REPEATS_REGION domain-containing protein OS=Setaria italica OX=4555 GN=101779222 PE=3 SV=1 | 2.1E-188 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH02.195, BH02.194 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0001820, gene-QOZ80_1BG0050360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0245090.1 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g11850.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G017800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204966, Pt_Chr0206811 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G028360, Chr05G006060 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G244600 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G142100.1, TraesCS3B02G162600.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb338620_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-24340 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9562 |