Basic Information
Locus ID:
BH02.1823
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 20913456 | 20919816 | - | BH02.1823 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 64,136.98 Da | 52.94 | 82.26 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 345 | 557 | 9.06679E-84 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 346 | 449 | 1.5E-15 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 15 | 117 | 3.8E-15 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 348 | 460 | 4.18E-16 | - |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 15 | 126 | 8.37E-8 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 333 | 498 | 2.4E-52 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 6 | 127 | 1.8E-31 | - |
| SMART | SM00232 | pad1_6 | 346 | 485 | 9.1E-9 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 347 | 476 | 24.598352 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 3.05E-109 |
| RefSeq | XP_034597002.1 | AMSH-like ubiquitin thioesterase 3 isoform X1 [Setaria viridis] | 3.2199999997552E-314 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 4.53E-132 | |
| TrEMBL | A0A4U6UI13 | MPN domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_5G179300v2 PE=3 SV=1 | 7.2899999999985E-313 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology