Basic Information
Locus ID:
BH02.1818
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 20687494 | 20693895 | + | BH02.1818 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 54,223.86 Da | 49.96 | 83.71 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08969 | USP8 dimerisation domain | 15 | 113 | 1.5E-16 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 338 | 406 | 2.6E-9 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 340 | 435 | 1.44E-12 | - |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 15 | 122 | 5.36E-8 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 330 | 470 | 1.9E-47 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 5 | 124 | 7.2E-31 | - |
| ProSiteProfiles | PS50249 | MPN domain profile. | 278 | 435 | 17.727846 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 328 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 1.47E-97 |
| RefSeq | XP_034597004.1 | AMSH-like ubiquitin thioesterase 3 isoform X2 [Setaria viridis] | 6.72E-297 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 7.88E-118 | |
| TrEMBL | A0A4U6UIS8 | MPN domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_5G179300v2 PE=3 SV=1 | 1.52E-295 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology