Basic Information
Locus ID:
BH02.1608
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 16144436 | 16146849 | + | BH02.1608 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 77,796.49 Da | 63.17 | 68.43 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 483 | 704 | 1.4E-66 | IPR000743 |
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 352 | 436 | 3.6E-8 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 307 | 745 | 5.24E-108 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 304 | 751 | 4.4E-103 | IPR012334 |
| SMART | SM00710 | pbh1 | 511 | 537 | 1400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 538 | 559 | 45.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 561 | 581 | 1100.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 593 | 614 | 4.8 | IPR006626 |
| SMART | SM00710 | pbh1 | 622 | 643 | 940.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 568 | 581 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 83 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 2.19E-161 |
| RefSeq | XP_025818759.1 | polygalacturonase At1g48100-like isoform X1 [Panicum hallii] | 5.24E-249 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 2.1E-160 | |
| TrEMBL | K3XQE3 | Polygalacturonase OS=Setaria italica OX=4555 PE=3 SV=1 | 5.02E-248 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology