Basic Information
Locus ID:
BH02.1574
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Sec23/Sec24 beta-sandwich domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 15520081 | 15541012 | - | BH02.1574 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 328,962.97 Da | 59.77 | 76.27 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01468 | trunk_domain | 2391 | 2634 | 1.10927E-70 | - |
| CDD | cd11280 | gelsolin_like | 2849 | 2940 | 6.77077E-14 | - |
| Pfam | PF08033 | Sec23/Sec24 beta-sandwich domain | 2643 | 2734 | 1.4E-11 | IPR012990 |
| Pfam | PF13359 | DDE superfamily endonuclease | 1498 | 1638 | 1.3E-17 | IPR027806 |
| Pfam | PF12776 | Myb/SANT-like DNA-binding domain | 1089 | 1176 | 2.8E-11 | IPR024752 |
| Pfam | PF04815 | Sec23/Sec24 helical domain | 2748 | 2844 | 1.1E-8 | IPR006900 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 674 | 761 | 3.2E-21 | IPR026960 |
| Pfam | PF00626 | Gelsolin repeat | 2875 | 2934 | 9.0E-5 | IPR007123 |
| Pfam | PF04810 | Sec23/Sec24 zinc finger | 2317 | 2349 | 2.1E-7 | IPR006895 |
| Pfam | PF03801 | HEC/Ndc80p family | 99 | 179 | 1.0E-16 | IPR005550 |
| Pfam | PF04811 | Sec23/Sec24 trunk domain | 2398 | 2625 | 7.0E-16 | IPR006896 |
| SUPERFAMILY | SSF82754 | C-terminal, gelsolin-like domain of Sec23/24 | 2849 | 2989 | 5.23E-28 | IPR036180 |
| SUPERFAMILY | SSF53300 | vWA-like | 2399 | 2634 | 4.67E-39 | IPR036465 |
| SUPERFAMILY | SSF82919 | Zn-finger domain of Sec23/24 | 2308 | 2377 | 6.54E-16 | IPR036174 |
| SUPERFAMILY | SSF81811 | Helical domain of Sec23/24 | 2747 | 2847 | 2.07E-21 | IPR036175 |
| SUPERFAMILY | SSF81995 | beta-sandwich domain of Sec23/24 | 2132 | 2745 | 1.29E-28 | - |
| Gene3D | G3DSA:3.40.20.10 | Severin | 2863 | 2962 | 1.4E-12 | IPR029006 |
| Gene3D | G3DSA:2.30.30.380 | - | 2308 | 2370 | 7.9E-9 | - |
| Gene3D | G3DSA:1.10.418.30 | Ncd80 complex, Ncd80 subunit | 71 | 171 | 3.2E-14 | IPR038273 |
| Gene3D | G3DSA:1.20.120.730 | Sec23/Sec24 helical domain | 2736 | 2855 | 1.3E-16 | - |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 2397 | 2642 | 1.0E-39 | IPR036465 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2093 | 2107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1227 | 1260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1758 | 1792 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1225 | 1267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2168 | 2191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2069 | 2145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 604 | 629 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 632 | - | - |
| Coils | Coil | Coil | 446 | 473 | - | - |
| Coils | Coil | Coil | 325 | 352 | - | - |
| Coils | Coil | Coil | 273 | 300 | - | - |
| Coils | Coil | Coil | 485 | 505 | - | - |
| Coils | Coil | Coil | 221 | 248 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01810.1 | Sec23/Sec24 protein transport family protein. | 0 |
| RefSeq | XP_004968650.1 | protein transport protein SEC23 [Setaria italica] | 0 |
| Q84WV4 | Protein transport protein SEC23 A OS=Arabidopsis thaliana OX=3702 GN=SEC23A PE=2 SV=1 | 0 | |
| TrEMBL | K3XEF6 | Protein transport protein SEC23 OS=Setaria italica OX=4555 GN=101752868 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28420 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20572 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020431 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g038700 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30104, Sbi_jg43556 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18346 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004123 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66109, Sgl70425 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014956, gene:ENSEOMG00000031529 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0015150, CQ.Regalona.r1.3BG0014860 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30124120, pistato.v30124970 |
| Apiaceae | Apium graveolens | 2 | Ag1G00741, Ag4G02164 |
| Arecaceae | Cocos nucifera | 1 | scaffold016572G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698245, gene-LOC103723562 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.395.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | FtriNA02367, FtriNA05310 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G54630.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010243m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g07820.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g057320.2N, BniB08g068870.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0700 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0754 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g12690 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0192s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g09990, gene.Thate01g10000, gene.Thate05g04170 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG07.48, evm.TU.LG08.1296, evm.TU.LG10.429 |
| Plantaginaceae | Plantago ovata | 6 | Pov_00001532, Pov_00011649, Pov_00019003, Pov_00028718 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24608 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.1499, AH02.3460, BH02.1574, BH02.3493, CH02.1721 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0670020, gene-QOZ80_9BG0693480 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0526850.1, HORVU.MOREX.r3.5HG0527750.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031192, gene-QYE76_033457 |
| Poaceae | Oryza coarctata | 6 | Oco15G001360, Oco15G001370, Oco15G012980, Oco16G001480 ... |
| Poaceae | Oryza sativa | 1 | LOC_Os08g36490.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G138500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0102240 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G022140, Chr03G007460, Chr05G013000 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G766000, Tel5E01G775000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG068810, gene_TRIDC5AG069480 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS5A02G482600.1, TraesCS5A02G487800.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb040130_P002, Zm00001eb135950_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-51807, nbis-gene-55280, nbis-gene-6526 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10237, Zma_g5972 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG04.2792, evm.TU.LG05.2201, evm.TU.LG07.1367 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g31050 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_2_RagTag.1596, evm.TU.Scaffold_2_RagTag.1597 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3690 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20408 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18983 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.351 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005063 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2783 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21817 |
| Salicaceae | Populus euphratica | 1 | populus_peu02549 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598735 |
| Solanaceae | Solanum chilense | 2 | SOLCI000672700, SOLCI002790300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006072 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.28562_chr04_-, gene_5923 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G3287, TC02G3349 |
| Zosteraceae | Zostera marina | 1 | Zosma04g20300.v3.1 |