Basic Information
Locus ID:
BH02.1525
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 14939537 | 14940127 | + | BH02.1525 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 20,217.39 Da | 61.03 | 71.99 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 120 | 164 | 1.08123E-16 | - |
| Pfam | PF13639 | Ring finger domain | 120 | 164 | 1.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 120 | 170 | 6.83E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 169 | 2.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 121 | 163 | 1.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 121 | 164 | 12.725326 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 98 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 2.27E-10 |
| RefSeq | XP_025817592.1 | E3 ubiquitin-protein ligase EL5-like [Panicum hallii] | 3.12E-74 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 5.82E-17 | |
| TrEMBL | A0A1E5UUP8 | RING-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0022388 PE=4 SV=1 | 1.42E-78 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology