Basic Information
Locus ID:
BH02.1524
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 14929211 | 14929939 | + | BH02.1524 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 24,674.68 Da | 47.54 | 80.87 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 128 | 171 | 1.09366E-17 | - |
| Pfam | PF13639 | Ring finger domain | 128 | 171 | 2.5E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 123 | 177 | 2.87E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 176 | 5.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 129 | 170 | 3.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 129 | 171 | 12.917115 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62690.1 | AtL5. Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end. | 7.73E-19 |
| RefSeq | XP_004967525.1 | E3 ubiquitin-protein ligase EL5 [Setaria italica] | 1.51E-83 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 2.04E-19 | |
| TrEMBL | A0A835F0D4 | RING-type E3 ubiquitin transferase OS=Digitaria exilis OX=1010633 GN=HU200_021415 PE=4 SV=1 | 4.27E-85 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH02.1452, BH02.1524 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1AG0014460 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0233030.1.CDS1 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G009280 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g20910.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G134700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G021900, Chr08G007690 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G156100, Tel6E01G148600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG010650, gene_TRIDC3BG014430 |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G087900.1.cds1, TraesCS3B02G103300.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb130410_P001, Zm00001eb340160_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-48940, nbis-gene-6548 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10213, Zma_g7881 |