halophFGD

Basic Information

Locus ID: BH02.1486

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Ubiquitin homologues

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH02	14507625	14508530	+	BH02.1486

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.51	30,450.98 Da	35.06	102.19	0.40

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00240	Ubiquitin family	83	155	1.6E-17	IPR000626
SUPERFAMILY	SSF54236	Ubiquitin-like	79	158	8.38E-22	IPR029071
Gene3D	G3DSA:3.10.20.90	-	75	163	4.2E-26	-
SMART	SM00213	ubq_7	81	153	9.4E-19	IPR000626
ProSiteProfiles	PS50053	Ubiquitin domain profile.	81	157	23.113796	IPR000626
ProSitePatterns	PS00299	Ubiquitin domain signature.	107	132	-	IPR019954
PRINTS	PR00348	Ubiquitin signature	134	155	7.7E-10	IPR019956
PRINTS	PR00348	Ubiquitin signature	91	111	7.7E-10	IPR019956

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K08770 (ubiquitin C)

Pathway:

ko03320 (PPAR signaling pathway) map03320 (PPAR signaling pathway)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G05050.4	ubiquitin 11. polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene.	5.01E-23
RefSeq	XP_039853135.1	uncharacterized protein LOC120711610 [Panicum virgatum]	8.79E-99
Swiss-Prot	P0CG83	Polyubiquitin (Fragment) OS=Hordeum vulgare OX=4513 PE=2 SV=1	7.67E-22
TrEMBL	A0A3L6RJJ8	Ubiquitin-like domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM13G06360 PE=4 SV=1	1.27E-100

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	2	BH02.1486, CH02.1604