Basic Information
Locus ID:
BH02.1377
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 13161304 | 13166243 | + | BH02.1377 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 40,029.74 Da | 53.95 | 59.47 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01926 | cyclophilin_ABH_like | 211 | 370 | 1.17154E-106 | - |
| Pfam | PF00160 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 215 | 370 | 2.8E-49 | IPR002130 |
| SUPERFAMILY | SSF50891 | Cyclophilin-like | 207 | 372 | 1.61E-74 | IPR029000 |
| Gene3D | G3DSA:2.40.100.10 | - | 197 | 375 | 3.9E-82 | IPR029000 |
| ProSiteProfiles | PS50072 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 214 | 371 | 45.590374 | IPR002130 |
| ProSitePatterns | PS00170 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 255 | 272 | - | IPR020892 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 303 | 318 | 1.7E-38 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 260 | 272 | 1.7E-38 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 231 | 246 | 1.7E-38 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 331 | 346 | 1.7E-38 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 318 | 330 | 1.7E-38 | IPR002130 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62030.3 | rotamase CYP 4. nuclear-encoded chloroplast stromal cyclophilin CYP20-3 (also known as ROC4). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | 5.91E-95 |
| RefSeq | XP_039808773.1 | peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic-like [Panicum virgatum] | 2.87E-132 |
| Q41651 | Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba OX=3906 PE=1 SV=1 | 6.37E-93 | |
| TrEMBL | A0A8T0RSH4 | Peptidyl-prolyl cis-trans isomerase OS=Panicum virgatum OX=38727 GN=PVAP13_5NG204600 PE=3 SV=1 | 6.5E-131 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology