Basic Information
Locus ID:
BH02.1198
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
SMG1
Description:
Belongs to the PI3 PI4-kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 11429633 | 11433865 | - | BH02.1198 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 135,749.13 Da | 43.18 | 102.75 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 507 | 772 | 1.53227E-52 | - |
| Pfam | PF00141 | Peroxidase | 62 | 217 | 2.1E-47 | IPR002016 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 515 | 771 | 1.3E-39 | IPR000477 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 1017 | 1101 | 2.1E-27 | IPR026960 |
| SUPERFAMILY | SSF48113 | Heme-dependent peroxidases | 42 | 211 | 1.44E-61 | IPR010255 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 455 | 771 | 3.3E-24 | IPR043502 |
| Gene3D | G3DSA:1.10.420.10 | Peroxidase, domain 2 | 180 | 212 | 8.2E-70 | - |
| Gene3D | G3DSA:1.10.520.10 | - | 46 | 179 | 8.2E-70 | - |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 494 | 772 | 17.403202 | IPR000477 |
| ProSiteProfiles | PS50873 | Plant heme peroxidase family profile. | 42 | 213 | 48.391655 | IPR002016 |
| ProSitePatterns | PS00436 | Peroxidases active site signature. | 74 | 85 | - | IPR019794 |
| PRINTS | PR00461 | Plant peroxidase signature | 76 | 96 | 2.6E-31 | IPR000823 |
| PRINTS | PR00461 | Plant peroxidase signature | 116 | 129 | 2.6E-31 | IPR000823 |
| PRINTS | PR00461 | Plant peroxidase signature | 135 | 145 | 2.6E-31 | IPR000823 |
| PRINTS | PR00458 | Haem peroxidase superfamily signature | 136 | 153 | 2.7E-14 | IPR002016 |
| PRINTS | PR00458 | Haem peroxidase superfamily signature | 74 | 88 | 2.7E-14 | IPR002016 |
| PRINTS | PR00461 | Plant peroxidase signature | 154 | 169 | 2.6E-31 | IPR000823 |
| PRINTS | PR00461 | Plant peroxidase signature | 52 | 71 | 2.6E-31 | IPR000823 |
| PRINTS | PR00458 | Haem peroxidase superfamily signature | 154 | 166 | 2.7E-14 | IPR002016 |
| Coils | Coil | Coil | 308 | 328 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G44970.1 | Peroxidase superfamily protein. | 6.51E-77 |
| RefSeq | XP_035815471.1 | uncharacterized protein LOC100281651 isoform X1 [Zea mays] | 0 |
| Q96512 | Peroxidase 9 OS=Arabidopsis thaliana OX=3702 GN=PER9 PE=1 SV=1 | 6.27E-76 | |
| TrEMBL | A0A1D6PNE1 | Protein kinase domain superfamily protein OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d048667 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology