Basic Information
Locus ID:
BH02.1085
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the complex I 20 kDa subunit family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH02 | 10383882 | 10388493 | - | BH02.1085 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 76,352.10 Da | 74.68 | 55.89 | -1.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01058 | NADH ubiquinone oxidoreductase, 20 Kd subunit | 627 | 659 | 8.1E-5 | IPR006137 |
| Pfam | PF12776 | Myb/SANT-like DNA-binding domain | 306 | 397 | 2.4E-7 | IPR024752 |
| SUPERFAMILY | SSF56770 | HydA/Nqo6-like | 631 | 668 | 2.62E-11 | - |
| Gene3D | G3DSA:3.40.50.12280 | - | 626 | 676 | 1.2E-14 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 509 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 488 | - | - |
| Coils | Coil | Coil | 441 | 461 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G11770.1 | NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial. | 3.28E-23 |
| RefSeq | XP_025818423.1 | uncharacterized protein LOC112894820 isoform X2 [Panicum hallii] | 8.82E-47 |
| P42027 | NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Brassica oleracea OX=3712 PE=1 SV=1 | 2.97E-22 | |
| TrEMBL | A0A2S3HWK8 | Myb_DNA-bind_3 domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_5G425000 PE=4 SV=1 | 1.22E-72 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Brassica nigra | 1 | BniB03g058380.2N |
| Poaceae | Echinochloa crus-galli | 24 | AH01.4755, AH02.2722, AH04.1015, AH05.1286, AH05.1766 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0063290 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0136190.1 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g46770.1 |
| Poaceae | Paspalum vaginatum | 13 | gene-BS78_01G057300, gene-BS78_02G211300, gene-BS78_K021000 ... |
| Poaceae | Sporobolus alterniflorus | 18 | Chr01G028140, Chr02G020120, Chr02G020680, Chr03G014060 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G440600 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG030720, gene_TRIDC2AG037920 ... |
| Poaceae | Zea mays | 4 | Zm00001eb009750_P001, Zm00001eb012990_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21483 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10439 |