Basic Information
Locus ID:
BH01.988
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 8535726 | 8544544 | - | BH01.988 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 89,375.73 Da | 54.38 | 73.68 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 267 | 292 | 7.0E-7 | IPR001876 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 679 | 775 | 3.6E-14 | IPR000608 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 260 | 291 | 2.75E-5 | IPR036443 |
| SUPERFAMILY | SSF54495 | UBC-like | 647 | 780 | 7.39E-37 | IPR016135 |
| Gene3D | G3DSA:4.10.1060.10 | - | 303 | 340 | 1.2E-9 | - |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 640 | 782 | 2.5E-41 | IPR016135 |
| Gene3D | G3DSA:4.10.1060.10 | - | 259 | 295 | 8.8E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 341 | 374 | 1.2E-5 | - |
| SMART | SM00212 | ubc_7 | 652 | 796 | 2.4E-11 | - |
| SMART | SM00547 | zf_4 | 269 | 293 | 1.9E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 313 | 337 | 0.011 | IPR001876 |
| SMART | SM00547 | zf_4 | 346 | 370 | 0.25 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 344 | 373 | 8.783842 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 267 | 296 | 9.788849 | IPR001876 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 649 | 797 | 34.433331 | IPR000608 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 271 | 290 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 348 | 367 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 767 | 787 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 263 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.2 | Ran BP2/NZF zinc finger-like superfamily protein. | 3.78E-136 |
| RefSeq | XP_025797736.1 | uncharacterized protein LOC112877609 [Panicum hallii] | 0 |
| Q93YP0 | Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana OX=3702 GN=UEV1A PE=1 SV=1 | 6.03E-76 | |
| TrEMBL | A0A5J9WBQ3 | Zinc finger protein VAR3, chloroplastic (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_04898 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology