Basic Information
Locus ID:
BH01.73
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
LisH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 1227478 | 1233410 | - | BH01.73 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.86 | 81,194.11 Da | 45.42 | 71.29 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 465 | 746 | 8.07531E-54 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 633 | 663 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 543 | 578 | 2.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 466 | 493 | 0.019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 715 | 746 | 0.087 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 34 | 7.9E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 504 | 535 | 3.8E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 463 | 746 | 3.51E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 593 | 746 | 2.4E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 417 | 592 | 1.3E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 454 | 493 | 0.0023 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0014 | IPR006594 |
| SMART | SM00320 | WD40_4 | 707 | 746 | 0.0013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 539 | 579 | 8.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 582 | 621 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 496 | 535 | 3.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 625 | 663 | 5.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 666 | 705 | 15.0 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.432788 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 714 | 746 | 11.89286 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 503 | 535 | 11.444681 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 503 | 535 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 546 | 588 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 461 | 502 | 8.870959 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 546 | 580 | 8.781968 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 714 | 746 | 12.714052 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 364 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 372 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 2.37E-207 |
| RefSeq | XP_025794282.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Panicum hallii] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 2.2E-204 | |
| TrEMBL | A0A2T7BY28 | LisH domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G001500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology