halophFGD

Basic Information

Locus ID: BH01.661

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: eukaryotic translation initiation factor

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH01	5826382	5833065	-	BH01.661

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.70	68,317.35 Da	53.24	78.73	-0.33

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd04468	S1_eIF5A	547	617	5.55762E-32	-
Pfam	PF01287	Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold	546	615	1.4E-28	IPR020189
SUPERFAMILY	SSF50978	WD40 repeat-like	59	338	1.1E-31	IPR036322
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	547	617	2.11E-24	IPR012340
SUPERFAMILY	SSF50104	Translation proteins SH3-like domain	476	554	6.02E-26	IPR008991
Gene3D	G3DSA:2.40.50.140	-	547	620	3.7E-33	-
Gene3D	G3DSA:2.130.10.10	-	48	361	7.5E-55	IPR015943
Gene3D	G3DSA:2.30.30.30	-	461	546	1.1E-42	IPR014722
SMART	SM00320	WD40_4	46	87	2.5	IPR001680
SMART	SM00320	WD40_4	261	306	1.4	IPR001680
SMART	SM01376	eIF_5a_2	546	615	1.5E-34	IPR020189
SMART	SM00320	WD40_4	129	168	0.16	IPR001680
SMART	SM00320	WD40_4	89	127	21.0	IPR001680
TIGRFAM	TIGR00037	eIF_5A: translation elongation factor IF5A	478	614	1.6E-40	IPR001884
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	136	168	10.541869	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	136	168	8.861059	-
ProSitePatterns	PS00302	Eukaryotic initiation factor 5A hypusine signature.	511	518	-	IPR019769
MobiDBLite	mobidb-lite	consensus disorder prediction	408	445	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	462	483	-	-

Gene Ontology

Biological Process:

GO:0045901 (positive regulation of translational elongation) GO:0045905 (positive regulation of translational termination)

Molecular Function:

GO:0003723 (RNA binding) GO:0003746 (translation elongation factor activity) GO:0005515 (protein binding) GO:0043022 (ribosome binding)

KEGG Pathway

KO Term:

K02180 (cell cycle arrest protein BUB3)

Pathway:

ko04110 (Cell cycle) map04110 (Cell cycle) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G13950.1	eukaryotic elongation factor 5A-1. Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced.	7.95E-89
RefSeq	XP_019053427.1	PREDICTED: mitotic checkpoint protein BUB3.3-like [Nelumbo nucifera]	5.2E-184
Swiss-Prot	P56335	Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum OX=4113 GN=EIF5A3 PE=2 SV=1	2.04E-98
TrEMBL	B8AK76	eIF-5a domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_13610 PE=3 SV=1	5.34E-224

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg28605, jg30205, jg9294
Aizoaceae	Mesembryanthemum crystallinum	2	gene_11170, gene_3829
Amaranthaceae	Atriplex hortensis	2	Ah013075, Ah015761
Amaranthaceae	Beta vulgaris	2	BVRB_6g153130, BVRB_8g189660
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg25217, Sbi_jg42998, Sbi_jg45606, Sbi_jg9059
Amaranthaceae	Salicornia europaea	2	Seu_jg11451, Seu_jg19527
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00002080, GOSA_00011285
Amaranthaceae	Suaeda glauca	5	Sgl35730, Sgl35749, Sgl41047, Sgl43381, Sgl48184
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000002928, gene:ENSEOMG00000011133 ... gene:ENSEOMG00000012152, gene:ENSEOMG00000012269, gene:ENSEOMG00000027289, gene:ENSEOMG00000035097, gene:ENSEOMG00000044501
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.6BG0000350, CQ.Regalona.r1.8AG0011850 ... CQ.Regalona.r1.8BG0013770
Anacardiaceae	Pistacia vera	2	pistato.v30106460, pistato.v30227270
Apiaceae	Apium graveolens	3	Ag1G00844, Ag1G01450, Ag7G01300
Arecaceae	Cocos nucifera	1	COCNU_05G003030
Arecaceae	Phoenix dactylifera	2	gene-LOC103705293, gene-LOC120107817
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.1494.V1.1, AsparagusV1_08.1260.V1.1
Asteraceae	Flaveria trinervia	2	Ftri14G11853, Ftri9G34027
Brassicaceae	Arabidopsis thaliana	3	AT1G49910.1, AT1G69400.1, AT3G19590.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10009106m.g.v1.0, Thhalv10011632m.g.v1.0 ... Thhalv10018903m.g.v1.0, Thhalv10021448m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g36790.v2.2, Sp3g17630.v2.2, Sp5g24450.v2.2
Brassicaceae	Brassica nigra	4	BniB02g030470.2N, BniB05g066350.2N, BniB07g005560.2N ... BniB07g051150.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq07G1200, Ceq09G0277
Casuarinaceae	Casuarina glauca	2	Cgl07G1264, Cgl09G0312
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g19220, gene.Cymno11g04180
Dunaliellaceae	Dunaliella salina	1	Dusal.0486s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate09g05260, gene.Thate09g06100, gene.Thate09g06110
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-11153
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.323, evm.TU.LG08.597
Plantaginaceae	Plantago ovata	2	Pov_00002328, Pov_00012168
Plumbaginaceae	Limonium bicolor	1	Lb6G30782
Poaceae	Echinochloa crus-galli	5	AH01.3205, BH01.3567, BH01.661, CH01.3779, Contig309.24
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_3AG0229240, gene-QOZ80_3BG0274340
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0129480.1, HORVU.MOREX.r3.4HG0396550.1 ... HORVU.MOREX.r3.5HG0512190.1
Poaceae	Lolium multiflorum	2	gene-QYE76_016440, gene-QYE76_040006
Poaceae	Oryza coarctata	5	Oco05G016690, Oco05G024110, Oco06G017310, Oco06G025020 ... Oco14G012240
Poaceae	Oryza sativa	3	LOC_Os03g33580.1, LOC_Os03g55140.1, LOC_Os07g39950.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G315500
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0105121, Pt_Chr0107257, Pt_Chr0107284, Pt_Chr0304687
Poaceae	Sporobolus alterniflorus	6	Chr01G004730, Chr04G013860, Chr04G029010, Chr07G013300 ... Chr07G013310, Chr12G037170
Poaceae	Thinopyrum elongatum	3	Tel2E01G356600, Tel4E01G420800, Tel5E01G629700
Poaceae	Triticum dicoccoides	7	gene_TRIDC2AG024910, gene_TRIDC2AG024920 ... gene_TRIDC2BG028100, gene_TRIDC4AG008060, gene_TRIDC4BG043000, gene_TRIDC5AG057710, gene_TRIDC5BG061860
Poaceae	Triticum aestivum	9	TraesCS2A02G194000.1, TraesCS2B02G212800.1 ... TraesCS2D02G193800.1, TraesCS4A02G058600.1, TraesCS4B02G246100.1, TraesCS4D02G245500.2, TraesCS5A02G396600.1, TraesCS5B02G401600.1, TraesCS5D02G406300.1
Poaceae	Zea mays	2	Zm00001eb011600_P001, Zm00001eb057920_P002
Poaceae	Zoysia japonica	2	nbis-gene-16224, nbis-gene-43500
Poaceae	Zoysia macrostachya	2	Zma_g2750, Zma_g3401
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.852, evm.TU.LG01.853, evm.TU.LG04.2596 ... evm.TU.LG08.11
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g01220, gene.Posoc04g08380
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_15_RagTag.584, evm.TU.Scaffold_2_RagTag.405
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-26752, nbisL1-mrna-4790
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-14474, nbisL1-mrna-5813
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-15785, nbisL1-mrna-9751
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000001l.294, evm.TU.utg000009l.717
Rhizophoraceae	Kandelia obovata	2	Maker00002538, Maker00005014
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-11370, nbisL1-mrna-2548
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-16495, nbisL1-mrna-23491
Salicaceae	Populus euphratica	4	populus_peu01609, populus_peu06768, populus_peu20665 ... populus_peu36221
Solanaceae	Lycium barbarum	2	gene-LOC132598949, gene-LOC132642009
Solanaceae	Solanum chilense	2	SOLCI003636500, SOLCI005208300
Solanaceae	Solanum pennellii	2	gene-LOC107019024, gene-LOC107032384
Tamaricaceae	Reaumuria soongarica	2	gene_13660, gene_8247
Tamaricaceae	Tamarix chinensis	2	TC01G3016, TC10G0785
Zosteraceae	Zostera marina	2	Zosma05g27600.v3.1, Zosma06g10290.v3.1