Basic Information
Locus ID:
BH01.627
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Helix-loop-helix DNA-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 5574557 | 5584712 | - | BH01.627 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 175,480.86 Da | 44.61 | 74.73 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 669 | 849 | 2.49614E-78 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 914 | 985 | 8.0E-13 | IPR041577 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 687 | 849 | 7.1E-20 | IPR000477 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 1502 | 1542 | 2.7E-8 | IPR011598 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 977 | 1088 | 1.2E-25 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 629 | 989 | 3.78E-108 | IPR043502 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 1494 | 1558 | 6.41E-14 | IPR036638 |
| Gene3D | G3DSA:3.30.420.10 | - | 958 | 1132 | 2.4E-33 | IPR036397 |
| Gene3D | G3DSA:4.10.280.10 | - | 1495 | 1557 | 2.8E-12 | IPR036638 |
| Gene3D | G3DSA:3.30.70.270 | - | 712 | 849 | 7.1E-58 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 859 | 943 | 9.6E-22 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 630 | 774 | 7.1E-58 | - |
| SMART | SM00353 | finulus | 1498 | 1547 | 3.7E-13 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 1492 | 1541 | 15.192548 | IPR011598 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 916 | 1082 | 17.12174 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1444 | 1477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1417 | 1498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1422 | 1436 | - | - |
| Coils | Coil | Coil | 1115 | 1135 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14760.1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein. | 5.41E-39 |
| RefSeq | XP_052161258.1 | uncharacterized protein LOC127778677 isoform X1 [Oryza glaberrima] | 1.66E-171 |
| Q99315 | Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3 | 3.01E-44 | |
| TrEMBL | Q2QU35 | Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g17620 PE=4 SV=1 | 1.14E-306 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |