Basic Information
Locus ID:
BH01.5262
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 55347096 | 55350652 | + | BH01.5262 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 55,971.94 Da | 39.13 | 69.89 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 372 | 412 | 0.0035 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 461 | 497 | 6.1E-5 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 253 | 308 | 1.6E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 332 | 367 | 5.2E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 200 | 520 | 4.39E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 194 | 502 | 3.7E-126 | IPR015943 |
| SMART | SM00320 | WD40_4 | 244 | 284 | 0.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 287 | 324 | 0.038 | IPR001680 |
| SMART | SM00320 | WD40_4 | 328 | 367 | 1.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 200 | 241 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 458 | 497 | 1.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 370 | 412 | 3.8E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 335 | 367 | 13.282162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 465 | 498 | 11.919224 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 335 | 367 | 11.022865 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 252 | 293 | 8.703868 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 465 | 498 | 14.41838 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 484 | 498 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 65 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 7.71E-240 |
| RefSeq | XP_025793598.1 | protein FIZZY-RELATED 2-like [Panicum hallii] | 0 |
| Q8L3Z8 | Protein FIZZY-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=FZR2 PE=1 SV=1 | 7.39E-239 | |
| TrEMBL | A0A2S3IUR7 | ANAPC4_WD40 domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_9G626300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology