Basic Information
Locus ID:
BH01.5085
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 53682220 | 53686126 | - | BH01.5085 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 55,310.17 Da | 36.65 | 71.16 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 463 | 499 | 6.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 334 | 369 | 7.7E-6 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 254 | 310 | 1.4E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 374 | 414 | 0.0034 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 202 | 505 | 3.66E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 196 | 504 | 3.7E-126 | IPR015943 |
| SMART | SM00320 | WD40_4 | 289 | 326 | 0.038 | IPR001680 |
| SMART | SM00320 | WD40_4 | 372 | 414 | 3.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 243 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 330 | 369 | 2.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 460 | 499 | 1.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 286 | 0.1 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 337 | 369 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 467 | 500 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 337 | 369 | 10.996502 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 467 | 500 | 11.919224 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 254 | 295 | 8.703868 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 486 | 500 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 67 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 6.24E-237 |
| RefSeq | XP_025793598.1 | protein FIZZY-RELATED 2-like [Panicum hallii] | 0 |
| Q9M7I2 | B-type cell cycle switch protein ccs52A OS=Medicago truncatula OX=3880 GN=CCS52A PE=1 SV=1 | 1.56E-236 | |
| TrEMBL | A0A2S3IUR7 | ANAPC4_WD40 domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_9G626300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology