Basic Information
Locus ID:
BH01.4855
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 51903715 | 51905820 | - | BH01.4855 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.39 | 64,778.63 Da | 50.61 | 80.09 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 1 | 196 | 5.77716E-34 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 2 | 194 | 1.4E-31 | IPR000477 |
| Pfam | PF00071 | Ras family | 373 | 521 | 6.9E-48 | IPR001806 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 373 | 526 | 6.57E-45 | IPR027417 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1 | 266 | 1.33E-12 | IPR043502 |
| Gene3D | G3DSA:3.40.50.300 | - | 372 | 546 | 7.1E-53 | IPR027417 |
| Gene3D | G3DSA:3.30.70.270 | - | 5 | 169 | 1.6E-8 | IPR043128 |
| SMART | SM00174 | rho_sub_3 | 374 | 523 | 4.7E-9 | IPR001806 |
| SMART | SM00175 | rab_sub_5 | 373 | 523 | 4.2E-60 | - |
| SMART | SM00173 | ras_sub_4 | 364 | 523 | 3.4E-18 | - |
| SMART | SM00176 | ran_sub_2 | 370 | 558 | 0.0043 | - |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 373 | 513 | 2.2E-23 | IPR005225 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1 | 196 | 20.888031 | IPR000477 |
| ProSiteProfiles | PS51421 | small GTPase Ras family profile. | 355 | 551 | 14.897109 | IPR001806 |
| ProSiteProfiles | PS51419 | small GTPase Rab1 family profile. | 353 | 556 | 26.945087 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 463 | 476 | 7.3E-24 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 383 | 399 | 7.3E-24 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 498 | 520 | 7.3E-24 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 401 | 423 | 7.3E-24 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17160.1 | RAB GTPase homolog B1A. | 3.48E-65 |
| RefSeq | XP_039816152.1 | uncharacterized protein LOC120678828 [Panicum virgatum] | 2.15E-216 |
| P49103 | Ras-related protein Rab-2-A OS=Zea mays OX=4577 GN=RAB2A PE=2 SV=2 | 9.79E-65 | |
| TrEMBL | A0A8T0UDJ9 | Reverse transcriptase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG093260 PE=4 SV=1 | 3.03E-240 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg22385, Sbi_jg25863 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007598, GOSA_00020792 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl20234 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000007376, gene:ENSEOMG00000009922 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0021820, CQ.Regalona.r1.6AG0000030 ... |
| Asteraceae | Flaveria trinervia | 16 | Ftri11G29042, Ftri15G13285, Ftri15G27723, Ftri16G20483 ... |
| Poaceae | Echinochloa crus-galli | 51 | AH01.164, AH01.394, AH02.1450, AH02.1545, AH02.2093, AH05.25 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0332600 |
| Poaceae | Hordeum vulgare | 36 | HORVU.MOREX.r3.1HG0031420.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 14 | gene-QYE76_000087, gene-QYE76_028678, gene-QYE76_030060 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G011730 |
| Poaceae | Paspalum vaginatum | 12 | gene-BS78_01G159000, gene-BS78_01G509100, gene-BS78_K023600 ... |
| Poaceae | Sporobolus alterniflorus | 58 | Chr01G023790, Chr01G030010, Chr01G030020, Chr02G006560 ... |
| Poaceae | Thinopyrum elongatum | 6 | Tel2E01G536000, Tel5E01G418900, Tel5E01G419000 ... |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG060430 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4890 |
| Solanaceae | Lycium barbarum | 88 | gene-LOC132601412, gene-LOC132601432, gene-LOC132601565 ... |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016424 |
| Tamaricaceae | Reaumuria soongarica | 22 | MSTRG.2861_chr02_-, STRG.10221_chr06_+, STRG.10559_chr07_- ... |