Basic Information
Locus ID:
BH01.4753
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 51070949 | 51075633 | + | BH01.4753 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 92,112.44 Da | 49.63 | 64.25 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05699 | hAT family C-terminal dimerisation region | 606 | 671 | 3.9E-7 | IPR008906 |
| Pfam | PF04937 | Protein of unknown function (DUF 659) | 474 | 609 | 8.5E-48 | IPR007021 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 496 | 609 | 5.92E-12 | IPR012337 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 606 | 673 | 7.36E-13 | IPR012337 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 349 | 368 | 8.525807 | IPR003903 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 740 | 834 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 782 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 224 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039797698.1 | uncharacterized protein LOC120662666 [Panicum virgatum] | 4.05E-175 |
| TrEMBL | A0A811QK79 | DUF659 domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS40026 PE=4 SV=1 | 1.73E-279 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | BH01.4753, BH06.686, BH08.2468, BH08.2472, CH05.2087 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1BG0056120, gene-QOZ80_4BG0351070 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_048311, gene-QYE76_055843 |
| Poaceae | Paspalum vaginatum | 15 | gene-BS78_03G023900, gene-BS78_03G199100, gene-BS78_K224500 ... |
| Poaceae | Sporobolus alterniflorus | 11 | Chr03G013220, Chr03G013230, Chr03G013240, Chr05G004880 ... |