Basic Information
Locus ID:
BH01.4718
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 50815989 | 50817535 | - | BH01.4718 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.74 | 29,294.95 Da | 91.50 | 80.52 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 197 | 237 | 4.18E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 173 | 240 | 3.8E-8 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 93 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 5.25E-27 |
| RefSeq | XP_039803128.1 | E3 ubiquitin-protein ligase RDUF2-like [Panicum virgatum] | 3.6E-40 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 5.16E-26 | |
| TrEMBL | A0A8T0U1L3 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_3NG047823 PE=4 SV=1 | 8.15E-39 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for BH01.4718.