Basic Information
Locus ID:
BH01.4630
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Plant transposon protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 50113557 | 50118598 | - | BH01.4630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 50,202.81 Da | 71.57 | 46.85 | -1.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 63 | - | - |
| Coils | Coil | Coil | 170 | 200 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G43722.1 | 8.0E-7 | |
| RefSeq | XP_025818423.1 | uncharacterized protein LOC112894820 isoform X2 [Panicum hallii] | 2.01E-39 |
| TrEMBL | A0A2T7DXU9 | Myb_DNA-bind_3 domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G122200 PE=4 SV=1 | 1.13E-25 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Brassica nigra | 1 | BniB03g058380.2N |
| Poaceae | Echinochloa crus-galli | 24 | AH01.4755, AH02.2722, AH04.1015, AH05.1286, AH05.1766 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0063290 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0136190.1 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g46770.1 |
| Poaceae | Paspalum vaginatum | 13 | gene-BS78_01G057300, gene-BS78_02G211300, gene-BS78_K021000 ... |
| Poaceae | Sporobolus alterniflorus | 18 | Chr01G028140, Chr02G020120, Chr02G020680, Chr03G014060 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G440600 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG030720, gene_TRIDC2AG037920 ... |
| Poaceae | Zea mays | 4 | Zm00001eb009750_P001, Zm00001eb012990_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21483 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10439 |