Basic Information
Locus ID:
BH01.4618
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 49974682 | 49982529 | + | BH01.4618 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.31 | 135,012.63 Da | 47.34 | 77.87 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 547 | 580 | 0.0011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1008 | 1041 | 0.0092 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 434 | 756 | 5.29E-39 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 924 | 1186 | 7.1E-37 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 410 | 636 | 2.5E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1052 | 1208 | 2.2E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 637 | 784 | 1.3E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 828 | 1051 | 2.6E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1057 | 1089 | 450.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 628 | 671 | 28.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 918 | 956 | 47.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 540 | 581 | 2.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1002 | 1041 | 5.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 674 | 714 | 6.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 584 | 625 | 0.07 | IPR001680 |
| SMART | SM00667 | Lish | 98 | 130 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 1092 | 1133 | 9.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 434 | 473 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 959 | 999 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 494 | 534 | 11.0 | IPR001680 |
| SMART | SM00668 | ctlh | 128 | 186 | 1.7E-12 | IPR006595 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 128 | 186 | 12.886961 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1009 | 1041 | 9.915599 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 98 | 130 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 547 | 590 | 9.840087 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1009 | 1041 | 11.878597 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 568 | 582 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1198 | 1223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1187 | 1223 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_025792936.1 | protein TPR3 isoform X1 [Panicum hallii] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T8I5J4 | TOPLESS OS=Panicum hallii OX=206008 GN=PAHAL_9G528200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology