Basic Information
Locus ID:
BH01.4616
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 49963629 | 49966257 | + | BH01.4616 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 44,472.46 Da | 59.89 | 58.21 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 325 | 365 | 4.16207E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 324 | 370 | 5.4E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 325 | 371 | 1.2E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 310 | 375 | 2.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 326 | 364 | 2.6E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 326 | 365 | 11.427062 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 402 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 1.56E-128 |
| RefSeq | XP_025795032.1 | probable E3 ubiquitin-protein ligase LOG2 [Panicum hallii] | 1.98E-239 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 1.5E-127 | |
| TrEMBL | A0A3L6S8K3 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM02G31360 PE=3 SV=1 | 3.16E-238 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology