Basic Information
Locus ID:
BH01.4509
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Surface antigen
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 49126536 | 49133342 | - | BH01.4509 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 140,152.94 Da | 40.97 | 81.35 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 1092 | 1117 | 0.0013 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 945 | 992 | 2.4E-8 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 1003 | 1046 | 2.0E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 918 | 942 | 0.0078 | IPR002885 |
| Pfam | PF01103 | Omp85 superfamily domain | 515 | 822 | 2.2E-18 | IPR000184 |
| Pfam | PF13041 | PPR repeat family | 1118 | 1164 | 2.2E-10 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 998 | 1116 | 1.5E-20 | IPR011990 |
| Gene3D | G3DSA:2.40.160.50 | membrane protein fhac: a member of the omp85/tpsb transporter family | 502 | 826 | 3.7E-28 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 839 | 996 | 5.6E-25 | IPR011990 |
| Gene3D | G3DSA:3.10.20.310 | membrane protein fhac | 213 | 273 | 3.5E-5 | - |
| Gene3D | G3DSA:3.10.20.310 | membrane protein fhac | 395 | 477 | 4.7E-12 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1117 | 1298 | 3.0E-25 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1120 | 1153 | 1.4E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 947 | 980 | 1.5E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 982 | 1016 | 1.3E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 945 | 979 | 11.849223 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1118 | 1152 | 11.421732 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 980 | 1014 | 11.312119 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 913 | 943 | 8.736214 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1015 | 1049 | 8.988323 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1087 | 1117 | 9.119859 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46740.1 | translocon at the outer envelope membrane of chloroplasts 75-III. Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Expressed in young dividing photosynthetic tissues. Knockout mutants are embryo lethal with arrested development at the two-cell stage. Knockout mutants have abnormal etioplasts. | 0 |
| RefSeq | XP_034575325.1 | protein TOC75, chloroplastic [Setaria viridis] | 0 |
| Q84Q83 | Protein TOC75, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TOC75 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811MQ20 | Omp85 domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS6658 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8373 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6975 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027986 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g173430 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1705, Sbi_jg34847 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3038 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003239 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72920, Sgl76460 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007949, gene:ENSEOMG00000038505 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0003240, CQ.Regalona.r1.8AG0005180 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30062940, pistato.v30064080 |
| Apiaceae | Apium graveolens | 2 | Ag11G04191, Ag11G04192 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G015650, COCNU_13G000620 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103715666, gene-LOC103716747, gene-LOC120103964 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_01.2314.V1.1, AsparagusV1_03.2333.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G27062, Ftri12G02847 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G35860.1, AT1G35880.1, AT3G46740.1, AT4G09080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002403m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g14980.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g038840.2N, BniB05g053050.2N, BniB06g024600.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2085 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G2175, Cgl08G2180 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g07500 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0023s00025.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g00430 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-516 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1228 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016219 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31596 |
| Poaceae | Echinochloa crus-galli | 8 | AH01.4194, AH03.3463, BH01.4509, BH03.3670, BH04.860 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0242680, gene-QOZ80_3BG0285530 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_065051, gene-QYE76_069040 |
| Poaceae | Oryza coarctata | 5 | Oco05G009390, Oco06G009730, Oco22G000530, Oco23G000240 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g16440.1, LOC_Os11g02460.1, LOC_Os12g02385.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G403400, gene-BS78_02G324700 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0102275, Pt_Chr0102305, Pt_Chr0103788, Pt_Ctg00101 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G007620, Chr07G004000, Chr07G018820, Chr12G008770 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G193500, Tel4E01G367900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG013010, gene_TRIDC4AG030970 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS4A02G095300.1, TraesCS4A02G194000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb012140_P001, Zm00001eb397790_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-2101 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1539 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1874, evm.TU.LG14.2 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g15420 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.219, evm.TU.Scaffold_13_RagTag.881 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24584, nbisL1-mrna-30136 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15633 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16254 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.520 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015345 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4437 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11728, nbisL1-mrna-20901 |
| Salicaceae | Populus euphratica | 2 | populus_peu03861, populus_peu34696 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132605779 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023140 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_14278, gene_3289 |
| Tamaricaceae | Tamarix chinensis | 2 | TC11G0117, TC11G2060 |
| Zosteraceae | Zostera marina | 1 | Zosma02g00430.v3.1 |