Basic Information
Locus ID:
BH01.4505
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 49100200 | 49107736 | - | BH01.4505 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 66,483.80 Da | 50.59 | 75.72 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 222 | 264 | 2.37172E-22 | - |
| Pfam | PF13639 | Ring finger domain | 222 | 264 | 7.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 218 | 266 | 1.01E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 200 | 268 | 7.7E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 223 | 263 | 3.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 223 | 264 | 12.1057 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 201 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55530.1 | RING/U-box superfamily protein. Encodes an intracellular membrane localized protein with E3 ligase activity that is involved in regulation of ABA signaling. Loss of function alleles show decreased sensitivity to ABA. Overexpression results in increased sensitivity to ABA. | 1.16E-114 |
| RefSeq | XP_034574183.1 | E3 ubiquitin-protein ligase SDIR1 [Setaria viridis] | 6.95E-172 |
| Q9M2S6 | E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana OX=3702 GN=SDIR1 PE=1 SV=1 | 1.11E-113 | |
| TrEMBL | A0A8J5SRB2 | RING-type domain-containing protein OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0006g43969 PE=4 SV=1 | 3.9E-249 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH01.4505, CH02.1542 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3AG0242760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0388540.1 |
| Poaceae | Oryza coarctata | 2 | Oco05G009450, Oco06G009810 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g16580.1 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0102281, Pt_Chr0102309, Pt_Chr0102311 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G030890, Chr07G003950, Chr12G008720, Chr12G008730 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G366700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG013120, gene_TRIDC4BG037270 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G096100.2, TraesCS4B02G208500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb012210_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-2098, nbis-gene-3761, nbis-gene-57690 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1536 |