Basic Information
Locus ID:
BH01.4488
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 48907291 | 48917846 | - | BH01.4488 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.84 | 149,391.33 Da | 66.92 | 78.90 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 349 | 391 | 5.3788E-26 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 553 | 591 | 6.5E-9 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 471 | 509 | 2.8E-8 | IPR000225 |
| Pfam | PF04564 | U-box domain | 345 | 415 | 2.4E-19 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 441 | 716 | 6.14E-49 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 335 | 420 | 6.25E-30 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 342 | 418 | 4.2E-31 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 558 | 721 | 1.2E-26 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 434 | 557 | 2.7E-23 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 103 | 215 | 1.8E-8 | IPR036537 |
| SMART | SM00185 | arm_5 | 470 | 510 | 8.2E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 429 | 468 | 41.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 511 | 551 | 7.9 | IPR000225 |
| SMART | SM00185 | arm_5 | 552 | 592 | 0.0012 | IPR000225 |
| SMART | SM00185 | arm_5 | 593 | 633 | 8.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 634 | 674 | 290.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 348 | 411 | 1.8E-32 | IPR003613 |
| SMART | SM00185 | arm_5 | 678 | 718 | 120.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 481 | 523 | 12.0924 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 344 | 418 | 44.513329 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 563 | 605 | 9.4324 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 604 | 646 | 8.5224 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1179 | 1194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 876 | 890 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1360 | 1390 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1020 | 1092 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 866 | 890 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 970 | 994 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1259 | 1336 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1165 | 1207 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 4.66E-131 |
| RefSeq | XP_034574241.1 | protein spotted leaf 11-like [Setaria viridis] | 9.41E-296 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 1.63E-134 | |
| TrEMBL | A0A4U6T967 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_9G456100v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology