Basic Information
Locus ID:
BH01.4418
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ABC transporter C family member 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 48378982 | 48384552 | + | BH01.4418 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.66 | 165,039.05 Da | 41.13 | 102.42 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 939 | 1233 | 2.94748E-96 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 632 | 832 | 9.67256E-113 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 319 | 606 | 1.70329E-99 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1256 | 1476 | 1.71626E-117 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 941 | 1185 | 6.4E-33 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 650 | 784 | 1.7E-20 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 322 | 585 | 1.6E-21 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1275 | 1423 | 7.4E-28 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1248 | 1489 | 5.33E-64 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 937 | 1239 | 2.09E-54 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 629 | 854 | 3.47E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 308 | 614 | 1.1E-29 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1243 | 1494 | 2.0E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 619 | 866 | 2.1E-76 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 296 | 614 | 1.1E-45 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 903 | 1239 | 2.6E-64 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1284 | 1476 | 9.6E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 659 | 832 | 2.4E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1258 | 1492 | 16.913568 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 632 | 855 | 23.129356 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 941 | 1221 | 38.334126 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 318 | 598 | 29.804445 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 757 | 771 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 880 | 913 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 888 | 902 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_025798382.1 | ABC transporter C family member 3-like [Panicum hallii] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7CE68 | ABC transporter C family member 3 OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G518300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology