Basic Information
Locus ID:
BH01.416
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 3756075 | 3757397 | + | BH01.416 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.13 | 35,190.65 Da | 54.73 | 84.89 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 3 | 70 | 7.6366E-16 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 75 | 8.3E-15 | IPR000626 |
| Pfam | PF12776 | Myb/SANT-like DNA-binding domain | 156 | 252 | 2.4E-18 | IPR024752 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 76 | 5.07E-18 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 108 | 1.0E-19 | - |
| SMART | SM00213 | ubq_7 | 1 | 73 | 8.3E-12 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 77 | 20.34832 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 11 | 31 | 5.2E-5 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 32 | 52 | 5.2E-5 | IPR019956 |
| Coils | Coil | Coil | 207 | 227 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025797146.1 | uncharacterized protein LOC112877153 isoform X1 [Panicum hallii] | 2.76E-150 |
| TrEMBL | A0A2T7BZE1 | Ubiquitin-like domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G039500 PE=4 SV=1 | 6.24E-149 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.307, BH01.416, CH01.272 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0256580 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0523990.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_060920, gene-QYE76_060921, gene-QYE76_060922 |
| Poaceae | Oryza coarctata | 2 | Oco05G026740, Oco06G027730 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g53100.1, LOC_Os03g59370.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G040500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0105695 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G734600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG066530, gene_TRIDC5BG071540 |
| Poaceae | Triticum aestivum | 5 | TraesCS5A02G464200.1, TraesCS5B02G475600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb061840_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16537 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2528 |