Basic Information
Locus ID:
BH01.4058
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 45236466 | 45237043 | - | BH01.4058 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.71 | 17,452.73 Da | 79.71 | 72.95 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 104 | 147 | 2.10516E-17 | - |
| Pfam | PF13639 | Ring finger domain | 104 | 147 | 7.5E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 102 | 150 | 5.81E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 153 | 8.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 105 | 146 | 8.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 105 | 147 | 12.858103 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 61 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47560.1 | RING/U-box superfamily protein. | 4.86E-20 |
| RefSeq | XP_039781396.1 | E3 ubiquitin-protein ligase EL5-like [Panicum virgatum] | 3.85E-55 |
| O22255 | RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1 | 4.75E-19 | |
| TrEMBL | A0A1E5VRH4 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0011296 PE=4 SV=1 | 1.34E-61 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology