Basic Information
Locus ID:
BH01.4056
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 45222411 | 45222908 | - | BH01.4056 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 17,272.72 Da | 43.81 | 94.12 | 0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 96 | 139 | 2.61158E-17 | - |
| Pfam | PF13639 | Ring finger domain | 96 | 139 | 2.0E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 96 | 142 | 9.77E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 145 | 5.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 97 | 138 | 1.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 97 | 139 | 13.005633 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47560.1 | RING/U-box superfamily protein. | 2.54E-19 |
| RefSeq | XP_025798478.1 | RING-H2 finger protein ATL74-like [Panicum hallii] | 1.99E-80 |
| O22255 | RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1 | 2.48E-18 | |
| TrEMBL | A0A3L6TQ35 | E3 ubiquitin-protein ligase EL5-like OS=Panicum miliaceum OX=4540 GN=C2845_PM01G14460 PE=4 SV=1 | 3.55E-81 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology