Basic Information
Locus ID:
BH01.4020
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Transposase family tnp2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 44948674 | 44959310 | - | BH01.4020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 166,417.11 Da | 54.06 | 68.94 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13963 | Transposase-associated domain | 343 | 416 | 2.8E-18 | IPR029480 |
| Pfam | PF02992 | Transposase family tnp2 | 699 | 844 | 2.1E-49 | IPR004242 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 1331 | 1429 | 1.82E-7 | IPR038765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1137 | 1181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1071 | 1181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1217 | 1243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1073 | 1090 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1097 | 1118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 151 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039778865.1 | uncharacterized protein LOC120646298 [Panicum virgatum] | 5.59E-306 |
| TrEMBL | Q2QQN8 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g30390 PE=4 SV=1 | 8.22E-305 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |