Basic Information
Locus ID:
BH01.3988
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 44666723 | 44672320 | + | BH01.3988 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 66,017.40 Da | 54.97 | 66.78 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 341 | 385 | 9.65982E-14 | - |
| Pfam | PF14599 | Zinc-ribbon | 389 | 443 | 2.2E-12 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 340 | 384 | 2.9E-7 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 213 | 287 | 2.6E-18 | IPR008913 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 278 | 335 | 7.45E-18 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 210 | 277 | 5.75E-15 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 341 | 392 | 2.03E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 337 | 402 | 4.7E-11 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 411 | 448 | 1.7E-9 | - |
| SMART | SM00184 | ring_2 | 342 | 384 | 3.8E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 277 | 341 | 33.827148 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 342 | 385 | 11.722122 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 206 | 275 | 23.776911 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 129 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 1.24E-85 |
| RefSeq | XP_022679116.1 | E3 ubiquitin-protein ligase SRFP1 isoform X1 [Setaria italica] | 1.99E-159 |
| Q10LI1 | E3 ubiquitin-protein ligase SRFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SRFP1 PE=1 SV=1 | 1.35E-142 | |
| TrEMBL | K4AE18 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101763657 PE=4 SV=1 | 4.49E-158 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology