Basic Information
Locus ID:
BH01.3944
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ubiquitin-60S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 44358896 | 44360819 | + | BH01.3944 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.27 | 25,166.83 Da | 53.82 | 84.48 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01020 | Ribosomal L40e family | 181 | 208 | 1.2E-12 | IPR001975 |
| Pfam | PF00240 | Ubiquitin family | 103 | 171 | 6.5E-24 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 97 | 177 | 2.59E-24 | IPR029071 |
| SUPERFAMILY | SSF57829 | Zn-binding ribosomal proteins | 180 | 209 | 4.76E-6 | IPR011332 |
| Gene3D | G3DSA:3.10.20.90 | - | 96 | 181 | 8.6E-31 | - |
| Gene3D | G3DSA:4.10.1060.50 | - | 182 | 217 | 2.5E-11 | IPR038587 |
| SMART | SM00213 | ubq_7 | 101 | 173 | 1.1E-22 | IPR000626 |
| SMART | SM01377 | Ribosomal_L40e_3 | 180 | 222 | 6.2E-4 | IPR001975 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 101 | 177 | 23.375101 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 154 | 175 | 3.4E-14 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 111 | 131 | 3.4E-14 | IPR019956 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36170.1 | Ubiquitin supergroup;Ribosomal protein L40e. | 1.12E-40 |
| RefSeq | XP_025793617.1 | ubiquitin-like isoform X2 [Panicum hallii] | 9.84E-54 |
| P49632 | Ubiquitin-ribosomal protein eL40 fusion protein OS=Caenorhabditis elegans OX=6239 GN=ubq-2 PE=1 SV=2 | 1.34E-40 | |
| TrEMBL | A0A8T0MZH7 | Ubiquitin-like domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG669300 PE=3 SV=1 | 7.81E-53 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for BH01.3944.