Basic Information
Locus ID:
BH01.3508
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 39985068 | 39988868 | + | BH01.3508 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 63,848.72 Da | 63.72 | 73.68 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 157 | 211 | 3.8E-9 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 307 | 332 | 7.4E-5 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 264 | 294 | 3.2E-6 | IPR002110 |
| SUPERFAMILY | SSF57850 | RING/U-box | 400 | 460 | 7.07E-8 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 113 | 360 | 2.29E-38 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 101 | 222 | 8.3E-19 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 237 | 360 | 3.8E-22 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 388 | 470 | 1.8E-7 | IPR013083 |
| SMART | SM00248 | ANK_2a | 306 | 338 | 0.0048 | IPR002110 |
| SMART | SM00248 | ANK_2a | 189 | 219 | 0.49 | IPR002110 |
| SMART | SM00248 | ANK_2a | 155 | 184 | 0.0085 | IPR002110 |
| SMART | SM00248 | ANK_2a | 263 | 292 | 1.5E-6 | IPR002110 |
| SMART | SM00184 | ring_2 | 405 | 454 | 0.008 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 189 | 210 | 9.13699 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 306 | 332 | 10.73959 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 189 | 210 | 9.118069 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 263 | 295 | 12.9031 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 405 | 455 | 9.74522 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 306 | 332 | 10.709951 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 263 | 292 | 12.22224 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 420 | 429 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 279 | 293 | 7.4E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 143 | 158 | 7.4E-5 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 571 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 3.68E-178 |
| RefSeq | XP_052133807.1 | probable E3 ubiquitin-protein ligase XBOS33 [Oryza glaberrima] | 1.61E-306 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 3.79E-307 | |
| TrEMBL | B8BHX4 | RING-type domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_34359 PE=4 SV=1 | 3.63E-305 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology