Basic Information
Locus ID:
BH01.347
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 3213720 | 3214901 | + | BH01.347 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 42,890.80 Da | 64.82 | 95.34 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 21 | 84 | 1.34E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 229 | 336 | 4.79E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 183 | 390 | 5.1E-10 | IPR032675 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 194 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039781509.1 | F-box/FBD/LRR-repeat protein At1g80470-like [Panicum virgatum] | 2.57E-117 |
| TrEMBL | A0A8T0N6T4 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9KG390506 PE=4 SV=1 | 5.81E-116 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 21 | AH01.379, AH06.351, BH01.347, BH01.349, BH01.350, BH01.351 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0334820 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_006876 |
| Poaceae | Oryza coarctata | 6 | Oco05G027310, Oco09G009330, Oco15G005400, Oco21G001910 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os03g25670.1, LOC_Os08g17110.1 |
| Poaceae | Paspalum vaginatum | 9 | gene-BS78_01G032200, gene-BS78_01G344200, gene-BS78_K091300 ... |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G001580, Chr12G033300, Chr23G004370 |