Basic Information
Locus ID:
BH01.3436
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 39336939 | 39339786 | - | BH01.3436 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.83 | 97,805.68 Da | 72.59 | 67.26 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 214 | 248 | 1.09E-5 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 184 | 254 | 1.4E-7 | - |
| SMART | SM00343 | c2hcfinal6 | 231 | 247 | 0.018 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 212 | 228 | 4.9 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 231 | 247 | 9.224166 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 514 | 560 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 828 | 852 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 514 | 557 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039831752.1 | uncharacterized protein LOC120692501 isoform X1 [Panicum virgatum] | 3.02E-31 |
| TrEMBL | A0A8T0R7W0 | CCHC-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_6KG225820 PE=4 SV=1 | 5.55E-92 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||