Basic Information
Locus ID:
BH01.3416
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Lipopolysaccharide kinase (Kdo/WaaP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 39118474 | 39124068 | - | BH01.3416 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 72,002.58 Da | 46.04 | 78.69 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 184 | 441 | 2.92253E-130 | - |
| CDD | cd00051 | EFh | 562 | 617 | 3.35351E-11 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 185 | 442 | 3.0E-72 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 174 | 459 | 6.61E-82 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 470 | 618 | 1.64E-29 | IPR011992 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 267 | 450 | 1.5E-55 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 458 | 550 | 1.4E-39 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 467 | 616 | 1.4E-39 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 174 | 266 | 2.2E-25 | - |
| SMART | SM00054 | efh_1 | 557 | 585 | 50.0 | IPR002048 |
| SMART | SM00220 | serkin_6 | 185 | 442 | 5.9E-90 | IPR000719 |
| SMART | SM00054 | efh_1 | 591 | 619 | 1.5 | IPR002048 |
| SMART | SM00054 | efh_1 | 488 | 516 | 0.51 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 185 | 442 | 46.717831 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 484 | 519 | 11.082272 | IPR002048 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 304 | 316 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 191 | 218 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 95 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38230.3 | calcium-dependent protein kinase 26. member of Calcium Dependent Protein Kinase | 1.6E-201 |
| RefSeq | XP_025795030.1 | calcium-dependent protein kinase 23-like [Panicum hallii] | 0 |
| P53682 | Calcium-dependent protein kinase 23 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK23 PE=1 SV=2 | 1.29E-275 | |
| TrEMBL | A0A1E5VUB4 | Calcium-dependent protein kinase isoform 1 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0010316 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.3068, BH01.3416, CH01.3657 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G300300 |
| Poaceae | Zea mays | 1 | Zm00001eb022180_P001 |