Basic Information
Locus ID:
BH01.3399
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
cellular macromolecule catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 39031139 | 39031561 | - | BH01.3399 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 14,847.72 Da | 19.91 | 90.64 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01806 | Ubl_NEDD8 | 62 | 135 | 5.53938E-38 | IPR038738 |
| Pfam | PF00240 | Ubiquitin family | 62 | 133 | 2.0E-22 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 60 | 136 | 6.69E-25 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 61 | 139 | 1.6E-28 | - |
| SMART | SM00213 | ubq_7 | 60 | 131 | 3.0E-19 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 62 | 135 | 23.287998 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 86 | 111 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 91 | 111 | 2.1E-17 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 70 | 90 | 2.1E-17 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 112 | 133 | 2.1E-17 | IPR019956 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31340.1 | related to ubiquitin 1. Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response. | 9.33E-30 |
| RefSeq | XP_025798259.1 | NEDD8-like [Panicum hallii] | 5.83E-49 |
| P0C030 | Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica OX=39947 GN=RUB1 PE=2 SV=2 | 8.32E-29 | |
| TrEMBL | A0A3L6SI88 | Ubiquitin-NEDD8-like protein RUB2 OS=Panicum miliaceum OX=4540 GN=C2845_PM02G21210 PE=4 SV=1 | 1.32E-47 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Plantaginaceae | Plantago ovata | 1 | Pov_00018702 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3052, BH01.3399, CH01.3639 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G299200 |