halophFGD

Basic Information

Locus ID: BH01.3395

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: protein Sb04g004280 source

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH01	39002560	39003636	-	BH01.3395

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.08	36,388.19 Da	41.43	84.88	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00240	Ubiquitin family	101	175	1.4E-9	IPR000626
SUPERFAMILY	SSF54236	Ubiquitin-like	228	302	3.83E-9	IPR029071
SUPERFAMILY	SSF54236	Ubiquitin-like	95	176	1.67E-11	IPR029071
Gene3D	G3DSA:3.10.20.90	-	91	192	7.6E-15	-
Gene3D	G3DSA:3.10.20.90	-	203	321	1.6E-10	-
SMART	SM00213	ubq_7	99	175	6.6E-6	IPR000626
SMART	SM00213	ubq_7	211	298	0.33	IPR000626
ProSiteProfiles	PS50053	Ubiquitin domain profile.	211	302	11.529284	IPR000626
ProSiteProfiles	PS50053	Ubiquitin domain profile.	99	172	12.16077	IPR000626
PRINTS	PR00348	Ubiquitin signature	156	177	1.2E-5	IPR019956
PRINTS	PR00348	Ubiquitin signature	112	132	1.2E-5	IPR019956
MobiDBLite	mobidb-lite	consensus disorder prediction	45	77	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K08770 (ubiquitin C)

Pathway:

ko03320 (PPAR signaling pathway) map03320 (PPAR signaling pathway)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G02890.1	Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats.	3.38E-21
RefSeq	XP_034570862.1	polyubiquitin-like [Setaria viridis]	1.11E-71
Swiss-Prot	P0CH33	Polyubiquitin 11 OS=Arabidopsis thaliana OX=3702 GN=UBQ11 PE=2 SV=1	3.3E-20
TrEMBL	A0A4U6T126	Ubiquitin-like domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G344000v2 PE=4 SV=1	4.65E-69

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

No orthogroup found for BH01.3395.