Basic Information
Locus ID:
BH01.3372
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 38753014 | 38759905 | + | BH01.3372 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 87,601.55 Da | 36.96 | 82.76 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 173 | 342 | 6.8E-20 | IPR001394 |
| Pfam | PF00133 | tRNA synthetases class I (I, L, M and V) | 533 | 601 | 2.7E-10 | IPR002300 |
| Pfam | PF00133 | tRNA synthetases class I (I, L, M and V) | 462 | 530 | 3.0E-13 | IPR002300 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 130 | 365 | 7.65E-48 | IPR038765 |
| SUPERFAMILY | SSF52374 | Nucleotidylyl transferase | 452 | 610 | 1.21E-32 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 120 | 367 | 1.1E-43 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 532 | 642 | 8.6E-11 | IPR014729 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 450 | 531 | 1.3E-18 | IPR014729 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 133 | 409 | 25.425928 | IPR028889 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14610.1 | valyl-tRNA synthetase / valine--tRNA ligase (VALRS). Required for proper proliferation of basal cells. | 2.57E-42 |
| RefSeq | XP_022685475.1 | ubiquitin carboxyl-terminal hydrolase 20 [Setaria italica] | 3.39E-134 |
| P93736 | Valine--tRNA ligase, mitochondrial 1 OS=Arabidopsis thaliana OX=3702 GN=TWN2 PE=1 SV=2 | 2.55E-41 | |
| TrEMBL | A0A3L6TRN2 | USP domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM01G47180 PE=4 SV=1 | 5.41E-129 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||