Basic Information
Locus ID:
BH01.3349
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 38470845 | 38471522 | - | BH01.3349 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 23,921.36 Da | 65.53 | 84.31 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 110 | 153 | 1.43387E-16 | - |
| Pfam | PF13639 | Ring finger domain | 110 | 153 | 6.6E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 109 | 158 | 7.29E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 92 | 159 | 1.6E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 111 | 152 | 1.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 111 | 153 | 13.153163 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| Coils | Coil | Coil | 183 | 203 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09100.1 | RING/U-box superfamily protein. | 2.72E-12 |
| RefSeq | XP_025796461.1 | probable E3 ubiquitin-protein ligase ATL44 [Panicum hallii] | 1.02E-114 |
| Q9M0R7 | RING-H2 finger protein ATL39 OS=Arabidopsis thaliana OX=3702 GN=ATL39 PE=2 SV=1 | 2.65E-11 | |
| TrEMBL | A0A2T7CAB6 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G410900 PE=4 SV=1 | 9.33E-113 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1557.V1.1 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.3349, CH01.3597 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0115660, gene-QOZ80_2BG0169500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0055590.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_012467, gene-QYE76_012508 |
| Poaceae | Oryza coarctata | 3 | Oco03G017450, Oco19G009460, Oco20G009340 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g39936.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G295400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0503107 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G004280, Chr13G020660 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G356100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG031240, gene_TRIDC1BG036650 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G207000.1.cds1, TraesCS1B02G220800.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb022760_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-36250, nbis-gene-47016, nbis-gene-57345 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12852, Zma_g15628 |