Basic Information
Locus ID:
BH01.3337
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 38341508 | 38347225 | + | BH01.3337 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 99,259.43 Da | 52.83 | 82.30 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 818 | 859 | 4.22775E-20 | - |
| CDD | cd01989 | STK_N | 44 | 199 | 1.47639E-33 | - |
| Pfam | PF04564 | U-box domain | 815 | 885 | 6.4E-17 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 527 | 730 | 3.3E-40 | IPR000719 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 58 | 164 | 1.17E-7 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 508 | 787 | 4.45E-64 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 809 | 885 | 7.33E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 813 | 890 | 2.7E-26 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 599 | 807 | 6.0E-44 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 39 | 164 | 1.5E-8 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 506 | 598 | 2.1E-28 | - |
| SMART | SM00504 | Ubox_2 | 817 | 880 | 2.3E-24 | IPR003613 |
| SMART | SM00220 | serkin_6 | 526 | 787 | 1.1E-27 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 813 | 887 | 29.767546 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 526 | 793 | 32.244614 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 644 | 656 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 532 | 553 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 320 | - | - |
| Coils | Coil | Coil | 112 | 132 | - | - |
| Coils | Coil | Coil | 443 | 463 | - | - |
| Coils | Coil | Coil | 471 | 498 | - | - |
| Coils | Coil | Coil | 408 | 435 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 9.45E-179 |
| RefSeq | XP_004986828.1 | U-box domain-containing protein 33 isoform X1 [Setaria italica] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 9.12E-178 | |
| TrEMBL | A0A368SNI5 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=SETIT_9G332800v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology