Basic Information
Locus ID:
BH01.3316
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the class-I aminoacyl-tRNA synthetase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 38004049 | 38016660 | - | BH01.3316 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 188,495.06 Da | 43.84 | 85.48 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07962 | Anticodon_Ia_Val | 718 | 807 | 2.50173E-27 | IPR033705 |
| Pfam | PF08264 | Anticodon-binding domain of tRNA ligase | 718 | 859 | 8.4E-27 | IPR013155 |
| Pfam | PF00133 | tRNA synthetases class I (I, L, M and V) | 451 | 519 | 7.4E-13 | IPR002300 |
| Pfam | PF00133 | tRNA synthetases class I (I, L, M and V) | 523 | 590 | 7.6E-10 | IPR002300 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 162 | 332 | 1.3E-19 | IPR001394 |
| SUPERFAMILY | SSF52374 | Nucleotidylyl transferase | 441 | 600 | 2.53E-32 | - |
| SUPERFAMILY | SSF47323 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 718 | 919 | 1.87E-36 | IPR009080 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 139 | 354 | 3.14E-42 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 113 | 356 | 2.4E-41 | - |
| Gene3D | G3DSA:1.10.730.10 | - | 713 | 860 | 1.0E-33 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 439 | 521 | 3.3E-18 | IPR014729 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 522 | 618 | 2.4E-10 | IPR014729 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 71 | 398 | 20.862507 | IPR028889 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1236 | 1259 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14610.1 | valyl-tRNA synthetase / valine--tRNA ligase (VALRS). Required for proper proliferation of basal cells. | 1.1E-59 |
| RefSeq | XP_037486559.1 | uncharacterized protein LOC119365074 isoform X1 [Triticum dicoccoides] | 5.46E-234 |
| P93736 | Valine--tRNA ligase, mitochondrial 1 OS=Arabidopsis thaliana OX=3702 GN=TWN2 PE=1 SV=2 | 1.09E-58 | |
| TrEMBL | A0A3L6TRN2 | USP domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM01G47180 PE=4 SV=1 | 1.24E-111 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||